PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010539871.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family SRS
Protein Properties Length: 377aa    MW: 41027.6 Da    PI: 7.1014
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010539871.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702217.23.5e-671293042154
          DUF702   2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa...................aeaaskrkre 77 
                     r+g+++CqdCGnqakkdC h+RCRtCCksrgf+C+thvkstWvpaakrrerq+qlaa+++++++                     +         
  XP_010539871.1 129 RQGGMNCQDCGNQAKKDCGHMRCRTCCKSRGFQCSTHVKSTWVPAAKRRERQAQLAALQQQQQQGGgcsrgdnvkrlrepssdggN--------- 214
                     7899*****************************************************99988877677866666665555555442......... PP

          DUF702  78 l..............kskkqsalsstklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                                     s    +l+ t++++a+s+  l + ++P+ev+s+avfrc+rvss+d+geee+aYqtav+igGhvfkGiLydqG+++
  XP_010539871.1 215 GddgdddkeldlvggGSGGGGSLAVTRVVNASSS-GLAVGHFPPEVNSPAVFRCIRVSSIDEGEEEYAYQTAVNIGGHVFKGILYDQGPDH 304
                     0444455555778777788899999999999765.888999************************************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051423.2E-65132303IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016239.3E-27134176IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016246.1E-28254302IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MAGFFYLGGG RDRNNNRQDH NHHQEKDQED KSNYLYLYKD EIYNPNNNNI NSNKGFEIWP  60
PQYFQEQQQQ HQQQQHISPA NFYSFGMVPS GSSSSNNNSN SNNNRCRNFY FNVVSDESLR  120
SSAGFTVTRQ GGMNCQDCGN QAKKDCGHMR CRTCCKSRGF QCSTHVKSTW VPAAKRRERQ  180
AQLAALQQQQ QQGGGCSRGD NVKRLREPSS DGGNGDDGDD DKELDLVGGG SGGGGSLAVT  240
RVVNASSSGL AVGHFPPEVN SPAVFRCIRV SSIDEGEEEY AYQTAVNIGG HVFKGILYDQ  300
GPDHSHNRYS SSPNAAAADS SQHLNLLALT ATATANAVPT GVTAGNNNAS LLDPSSLYPA  360
PLNAFITSTP FFPPPRS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010539871.10.0PREDICTED: protein SHI RELATED SEQUENCE 5
SwissprotQ9LQZ51e-141SRS5_ARATH; Protein SHI RELATED SEQUENCE 5
TrEMBLD7KSQ41e-137D7KSQ4_ARALL; Putative uncharacterized protein
STRINGAT1G75520.11e-139(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26452572
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75520.11e-111SHI-related sequence 5